States lab home

About the group

Research projects

• Gene expression regulation
• Macrophages and innate immunity
• Proteome Informatics
• Data integration and automated natural language procesing

People

Collaborators

News and events

Lab meetings

Rotation opportunities

Recruiting

Software and data

Contact and travel information

Selected Publications

Lee, AW, D.J. States. (2000)
Both src-dependent and -independent mechanisms mediate phosphatidylinositol 3-kinase regulation of colony-stimulating factor 1-activated mitogen-activated protein kinases in myeloid progenitors. Mol Cell Biol. 20(18):6779-98.

Kan, Z. Y., W. Gish, E. Rouchka, J. Glasscock, and D. J. States. (2000)
UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences. ISMB, 8:218-227.

Blackwell, T.W., Rouchka, E. C., States, D.J. (1999)
Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions. ISMB, 7:54-59.

Huang W., D. R. Fuhrmann. D. G. Politte, L. J. Thomas, and D. J. States. (1998)
Filter matrix estimation in automated DNA sequencing. IEEE Trans Biomed Eng. 45(4):422-8.

Rouchka, E.C., States, D.J. (1998)
Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis. ISMB, 6:140-147.

Agrawal, P. and D. J. States. (1998)
Comparative accuracy of methods for protein sequence similarity search.Bioinformatics. 14(1):40-7.

Cooper, M. L., D. R. Maffitt., J.D. Parsons, L. Hillier, and D. J. States. (1996)
Lane tracking software for four-color fluorescence-based electrophoretic gel images. Genome Res. 6(11):1110-7.

States, D. J. and P. Agrawal. (1996)
Compact encoding strategies for DNA sequence similarity search.ISMB. 4:211-7.

Agarwal, P., and States, D.J. (1996)
A Bayesian Evolutionary Distance for Parametrically Aligned Sequences. J. Comput. Biol. 3:1-17.

States, D. J. and W. Gish. (1994)
Combined use of sequence similarity and codon bias for coding region identification. J Comput Biol. 1(1):39-50.

Green, P., D. Lipman, L. Hillier, R. Waterston, D. States. and J. M. Claverie. (1993)
Ancient conserved regions in new gene sequences and the protein databases.
Science. 19;259(5102):1711-6.

Agarwal, P., and States, D.J. (1994)
The Repeat Pattern Toolkit (RPT): Analyzing the structure and evolution of the C. elegans genome. ISMB 2:1-9.

Gish, W. and D. J. States. (1993)
Identification of protein coding regions by database similarity search. Nat Genet. 3(3):266-72.

States, D.J., Harris, N.L. and Hunter, L. (1993)
Computationally efficient representation of classes in protein sequence megaclassification. Proc. Intel. Syst. for Mol. Biol.(ISMB) 1:387-394.

States, D.J. (1992)
Molecular sequence accuracy: analysing imperfect data Trends Genet. Feb;8(2):52-5. Review.

States, D.J. and Botstein D. (1991)
Molecular sequence accuracy and the analysis of protein coding regions. Proc Natl Acad Sci U S A. 88:5518-22.